CDS

Accession Number TCMCG015C40616
gbkey CDS
Protein Id XP_027071010.1
Location complement(join(42355981..42356014,42357937..42358083,42359096..42359260,42359348..42359478,42359651..42359756,42359835..42359934,42360011..42360136,42360570..42360770,42360888..42360975,42361948..42361996,42362079..42362174,42363178..42363261,42363917..42363975,42364060..42364094,42364181..42364305,42366474..42366549,42367705..42367860,42368033..42368039,42368122..42368159,42368268..42368347,42374178..42374249,42374892..42374983,42375207..42375281,42375629..42375765,42375907..42375992,42376836..42376927,42377656..42377994))
Gene LOC113695963
GeneID 113695963
Organism Coffea arabica

Protein

Length 931aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA506972
db_source XM_027215209.1
Definition DNA ligase 4-like isoform X5 [Coffea arabica]

EGGNOG-MAPPER Annotation

COG_category L
Description RNA ligase
KEGG_TC -
KEGG_Module -
KEGG_Reaction R00381        [VIEW IN KEGG]
KEGG_rclass RC00005        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10777        [VIEW IN KEGG]
EC 6.5.1.1        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03450        [VIEW IN KEGG]
map03450        [VIEW IN KEGG]
GOs GO:0000726        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003909        [VIEW IN EMBL-EBI]
GO:0003910        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005576        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006266        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006297        [VIEW IN EMBL-EBI]
GO:0006302        [VIEW IN EMBL-EBI]
GO:0006303        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010165        [VIEW IN EMBL-EBI]
GO:0010212        [VIEW IN EMBL-EBI]
GO:0016874        [VIEW IN EMBL-EBI]
GO:0016886        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0032807        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048046        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051103        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAGGAATCGGACATCAAATTCAACGTGATGGTTTCCTTATTCAACTGGACGCAGAAGAGCAAATCCTCGGCGACGAAGCGTTCCAAGTTCCGCAAATTCCTCGATGCTTTCTGCCGGGAACCGGGGGACTATTTTAGCGCCATCCGCCTCATTCTGCCGGTGCTCGACCGCGAGCGCGGTTCGTATGGACTCAAGGAGCACGCGCTCGCCACCTGCCTCATTGACGCCCTCGGCATGTCGCGTGACTCCCCGGACGCCCAACGCCTCCTTAATTGGCGCAAAGGTGGCCCCAAAACCGGCTCCAGCGCCGGCAACTTCTCCCTCGTCGCCTCCGAGGTCTTACAGAGAAGGCAAGGCTTGACTTCTGGCGGGCTGACTTTAAAAGAATTAAATGAACAGCTTGATCGCTTGTCTTCAAGTGAAAATAGAGCAGAGAAAACCTCAGTTCTTTCTGATTTGATCAGGAGAACAAACGCTCAAGAAATGAAGTGGATAATTATGATAATTCTCAAAGATCTGAAGTTGGGAATTAGTGAAAAAAGCATTTTTCATGAATTCCATCCGGATGCGGAGGACTTGTTCAATGTCACATGTGATTTGAAACTAGTTTGTGAAAAACTGAGGGACCGAAGTCAACGACACAAGCGTCAGGACATAGAAGTTGGAAAACCTGTGCGCCCTCAGCTAGCACTAAGGGTTAGCAATGCTAGTGCTGCATGGAAAAAGCTTCATGGGAAGGAAGTTGTTGTCGAATGCAAATTTGATGGTGATCGCATCCAAATTCATAAAAATAACTCGGAAATACGTTTCTTTTCTAGAAGTTTTCTTGATCATCCAGAGTATGAACATGCAATGTCAGACATCATTGCAAAGAACATTCTGGTTGACAGGTGTATTCTTGATGGTGAAATGTTGGTCTGGGATACATCTGAAAACCGTTTTGCAGATTTTGGTTCCAATCAGGGAATAGCAAAGGCAGCAAAGGAGGGACTTGATAGTGATCGGCAGATGTGCTATGTTGCTTTTGACATTCTTTATGTGGGAGATACCAGTGTTATACACCAAACTTTAGCAGAACGCCATGATCTTCTGCGCAAGGTTGTCAAGTCCATAAAAGGTCGATTGGAAATTTTGGTTCCTAATGGTGGTCTTAACGCAAGTCGCTCTCCTGGTGAACCATGTTGGTCCTTTGTAGCTCGTAGCCTTGACGAAGTCGAGAAGTTTTTTAAAGACACCATCGAGAATAGGGATGAAGGAATCGTCCTAAAAGATCTTGCTTCCAAATGGGAGCCAAGTGATCGGAGTGGAAAGTGGCTTAAGTTGAAGCCCGAGTATGTTAGAGCTGGTTCTGACTTAGATGTCCTCATTATAGGAGGCTACTATGGTTCTGGACGTCGTGGAGGGGAAGTATCGCAGTTTTTGGTAGGACTTGCAGAGCGTCCAATGCCAAATACCCATCCTAGGCGATTCATTTCGTTTTGTCGTGTTGGTACGGGACTTTCTGATGAGGAGCTTGATATAGTTGTTACAAAATTAAAACCTTATTTCAGGAAATATGAATACCCAAAGAAGGCGGCACCAAGCTTTTATCAAGTTACTAATAATTCGAAAGAGAGGCCAGATGTTTGGATTGAAAGTCCAGAGAAATCAGTTATTGTTTCGATTACTAGTGATATTCGGACCATAAAATCTGAGGTATTTGCTGCACCATACAGCCTGAGATTTCCACGGATTGATCGAGTAAGATTTGACAAGCCTTGGCATGAATGCCTTGATGTGCATACTTTTGTGGAGTTAGTTCATTCCAGCAACGGGACCACACAAAGAGGGGAAGCTTATGGAGATTCACAGGATCATAAACCCAAGCGCATGAAGTCAGCCAAAAAAGGGGAGAAGAATCTTTCAGTTGTTCCTTCTCATTTCATCCAGACTGATGTTTCCACTGTAAAGAGTGAAACGCTTATATTTGCAAAAATGATGTTCTACTTTGCTAATGTTCCTTCATCTCATTCCGTGGATCTGTTGCACAAAATGGTGGTGGAGAATGGGGGCAATTTCTCAATGAATTTGAATAACTCGGTCACACACTGTATTGCAGCTGAAAGTAGAGGAATCAAGTTTCAGGCAGCAAAGCTTCATGGTGATGTTATTCATTATTCTTGGCTTCTCGATTGCTGTTTGCAGAAGAAGCTCCTTCCCTTACAGCCAAAGTACTTTCTTTATCTTTCTGAACGCACGAAGAGAAAGTTGGAAGAAGAAATTGACCAATTCTCTGACTCTTACTATGTGGATGTTGATATTACAGATCTCAGACAGCTTTTGAGCAACATTGATCGAAGAGAGCATCCGAAAAGGATTGACTATTACAAAAAGAAATATTGTCCAAAGGAGGAATGGGCTCGTTTTCTTGGTTGCTGCTTTTACTTTTACTTTCCAGCGCAGTCTATAATTAACTTGGAGTGGAAAGTCCTAGTGGAACTTGCACTGAGGAGATTGAAGGTTGCAGTTTCTTTTGGTGGTGGCAGAATTAGTGATGATCTTTCTCATGCTACCCATGTAATCGTCTTGTCTGGGCCAGAATTAACTTTGGACTTCAATTTGCTATTTAGTAGATTATCAGCTGAGAAGCATCTTCTACTTAGTCAAGGGTTGCATGTTGTTTCTTCTCAGTGGTTGGAGGACTGCATTGAGAAGGACCAGAAATTGTCAGAGGAGAGTTACAGTCTGAAGCCCAACATGCAAGAATGGGTATTGGAGAGCCAAGAAATCCACCCTTATCTGCATCAGTTTTAG
Protein:  
MEESDIKFNVMVSLFNWTQKSKSSATKRSKFRKFLDAFCREPGDYFSAIRLILPVLDRERGSYGLKEHALATCLIDALGMSRDSPDAQRLLNWRKGGPKTGSSAGNFSLVASEVLQRRQGLTSGGLTLKELNEQLDRLSSSENRAEKTSVLSDLIRRTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKPVRPQLALRVSNASAAWKKLHGKEVVVECKFDGDRIQIHKNNSEIRFFSRSFLDHPEYEHAMSDIIAKNILVDRCILDGEMLVWDTSENRFADFGSNQGIAKAAKEGLDSDRQMCYVAFDILYVGDTSVIHQTLAERHDLLRKVVKSIKGRLEILVPNGGLNASRSPGEPCWSFVARSLDEVEKFFKDTIENRDEGIVLKDLASKWEPSDRSGKWLKLKPEYVRAGSDLDVLIIGGYYGSGRRGGEVSQFLVGLAERPMPNTHPRRFISFCRVGTGLSDEELDIVVTKLKPYFRKYEYPKKAAPSFYQVTNNSKERPDVWIESPEKSVIVSITSDIRTIKSEVFAAPYSLRFPRIDRVRFDKPWHECLDVHTFVELVHSSNGTTQRGEAYGDSQDHKPKRMKSAKKGEKNLSVVPSHFIQTDVSTVKSETLIFAKMMFYFANVPSSHSVDLLHKMVVENGGNFSMNLNNSVTHCIAAESRGIKFQAAKLHGDVIHYSWLLDCCLQKKLLPLQPKYFLYLSERTKRKLEEEIDQFSDSYYVDVDITDLRQLLSNIDRREHPKRIDYYKKKYCPKEEWARFLGCCFYFYFPAQSIINLEWKVLVELALRRLKVAVSFGGGRISDDLSHATHVIVLSGPELTLDFNLLFSRLSAEKHLLLSQGLHVVSSQWLEDCIEKDQKLSEESYSLKPNMQEWVLESQEIHPYLHQF